Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKEKFERNKPHVNVGTIGHVDHGKTTLTAAL--------------TKVCSDTWGGSARAFD-QIDNAPEEKARGITINTSHVEYDSAVRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMP-------QTREHILLSRQVGVPYIVVFLNKADMV----DDAELLELVEMEVRDLLNTYDFPGDDTPIIIGSALMALEGKDDNGIGVSAVQKLVE--TLDSYIPE---PVRAIDQPFLMPIEDVFSISGRGTVVTGRVERGIIKVQEEVEIVGIKATTKTTCTGVEMFRKLLDEGRAGENVGILLRGTKREDVERGQVLAKPGTIKPHT---KFECEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNCELPEGVEMVMP---------------GDNIKMVVTLIAPIAMEDGL------RFAIREGGRTVGAGVVAKIIE |
| 1JNY Chain:B ((4-427)) | ---------KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDR---------------MRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVD-QVSKFMRSYGFNTNKVRFV---PVVAPSG--DNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGD--KIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNN--PPTVADEFTARIIVV-----WHPTALANGYTPVLHVHTASVA--CRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDV-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JNY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202345 for 2836 contacts (-71.3/contact) +
2D Compatibility (PS) -38116 + (NN) -12166 + (LL) 2528
1D Compatibility (HY) -27600 + (ID) 6550
Total energy: -284249.0 ( -100.23 by residue)
QMean score : 0.492
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