Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRQNNNITEFVLLGFSQYPDVQNALFVMFLL-----------IYIVTMVGNLLIVVSIIASPFLGSPVYFFLACLSFIDAVYSTTISPVLIVDLLCDKKTISFPACMGQLFIEHLFG------DTDVFLLVVMAYDRYVATC-----KPLRYLTIMNRQVCILLLVVAVTGGFLHSV-FQILVVYSLPFCGPNVIYHFFCNIYPLLDLECTDT-YFVGLAVVFNGGAICMVIFTLLLISYG-----------VILNSLKTYSPEG---------RHKAPFICS----------------SHFIMVILFFVP--------CIFLYVRPVSNFPIDKFLTVFYSVITPKLNPFIYMLRNSEMRNAIENLLGYQSGKTG-------FRCSKLN-------------------- |
4XGC Chain:E ((1-458)) | MEAICSSLE------PLFPCREAAIETLGELIGDSSETYPSAIYLFGHSGTGKTALTRAFLKECGKRQNVRTAHLNAIEC-YTTKIMLEILLDSLAPDQGDALKVDNMLDFVEQLRRQAATRVEDQGFLIAVDNAERLRDMDANVLPVLLRLQELTNLNLCVILLSQLPFEKFYNKTGLSEIVCLHLAQYNKAETQRILGSDFQQVRNQLLEQKKRLEICQEAVTEDFYNNYLNLFLSVFYKACRDVPELQLTARKCLSTYLEPVLDGTSRLWRHIAGPLRSALTQIYMRIESLELPYYAKFLLIAAFLASHNAAKQDKRLFSTTLGPKSFSIDRLLAIFYAILEEKVGLTCNLLSQISTLVHL-NLLSFVSGEQNIMEGSARLQCTIGLEFVLQIGKVVGFNVRQYLCD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XGC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -346173 for 2059 contacts (-168.1/contact) +
2D Compatibility (PS) -32311 + (NN) -7405 + (LL) 932
1D Compatibility (HY) -6800 + (ID) 2800
Total energy: -394557.0 ( -191.63 by residue)
QMean score : 0.195
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