Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVILVDDHYIVRQGLRFLLSTIENIEVLQDFADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITEYIKAHYPEIKVLVLTSYVDDEHVISAINKGADGYEMKDVEPQQLIETIRRVMNGEKMIHPKAQDVFETVSQKPHYTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI
1YIO Chain:A ((5-200))
-PTVFVVDDDMSVREGLRNLLRSA-GFEVE-TFDCASTFLEHRRPE-QHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQ-ARETQ---DQLEQLFSSLTGREQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHLVEKY---
General information:
TITO was launched using:
RESULT:
Template:
1YIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91822 for 1439 contacts (-63.8/contact) +
2D Compatibility (PS) -20408 + (NN) 750 + (LL) 1392
1D Compatibility (HY) -10800 + (ID) 3050
Total energy: -123938.0 ( -86.13 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_1YIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YIO-query.scw
PDB file :
Tito_Scwrl_1YIO.pdb
: