Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEELFCIGCGARIQTENKDAAGYTPRAALEKGLETGELYCQRCFRLRHYNEITDVHITDDEFL-KLLHEV-GDSDALVVNVID----IFDFNGSIIPGLSRFVAGNDVLLVGNKKDILPKSVKDGKVTQWLTERAHEEGLRPVDVILTSAQNHHAIKD-LIDTIEKYRHGRD-------------VYVVGVTNVGKSTLINAIIREITGSRDVITTSRFPGTTLDKIEIPLDDGSYIFDTPGIIHRHQMAHYLTAKN----LKYVSPKKEIKPKTYQ-LNS-EQT--LFLAGLARFDFISGQKQGFTAYFDNNLNLHRTKLVGADEFYT-----KHVGK-LLT-PPTGKE------VSDFPKLVRHEFTIKNKMDIVYSGLGWIRVKSEAENPVVVAAWAPEGVAVVLRKALI----------------------- |
| 1MKY Chain:A ((2-439)) | -ATVLIVG---RPNVGKSTLFNKLVKDPVQDTVEWYG----KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKS--TVDTILVANKAENLREFERE------VKPELYSLGFGEPIPV--SAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK-----ERALVSPIPVDDEVFID---GRKYVFVDTAGLEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKR-YDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLAFTNLPRGL--KIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRSR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MKY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -87844 for 2465 contacts (-35.6/contact) +
2D Compatibility (PS) -35712 + (NN) -4159 + (LL) 2248
1D Compatibility (HY) -10800 + (ID) 2750
Total energy: -139017.0 ( -56.40 by residue)
QMean score : 0.255
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