Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPGCMSCKCVLS
2GF0 Chain:A ((7-173))
-NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRN----------------------
General information:
TITO was launched using:
RESULT:
Template:
2GF0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87826 for 1295 contacts (-67.8/contact) +
2D Compatibility (PS) -18499 + (NN) -5993 + (LL) 632
1D Compatibility (HY) -16400 + (ID) 3100
Total energy: -131186.0 ( -101.30 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_2GF0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GF0-query.scw
PDB file :
Tito_Scwrl_2GF0.pdb
: