Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTST---------------------SHVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEA--PKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQKSVLAQ
1J3K Chain:A ((25-231))
EGKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKET---KKLQNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKEDFDEDV-YIINKVEDLIVLLGK----LNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISV-----SDVYTSNNTTLDFIIYKKTNN--
General information:
TITO was launched using:
RESULT:
Template:
1J3K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64146 for 1151 contacts (-55.7/contact) +
2D Compatibility (PS) -18938 + (NN) -7597 + (LL) 552
1D Compatibility (HY) -16800 + (ID) 2800
Total energy: -109729.0 ( -95.33 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_1J3K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J3K-query.scw
PDB file :
Tito_Scwrl_1J3K.pdb
: