Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSHHWGYGKHNGPEHWHKDFP---IA-NGERQSPVDIDTKAVVQDPALKPLALVYGEATSRRMVNNGHSFNVEYDDSQDKAVLKDGPLTGTYRLVQFHFHWGSSDDQGSEHTVDRKKYAAELHLVHWNTKYGDFGTAAQQPDGLAVVGVFLKVGDANPALQKVLDALDSIKTKGKSTDFPNFDPGSLLPNVLDYWTYPGSLTTPPLLESVTWIVLKEPISVSSQQMLKFRTLNFNAEGEPELLMLANWRPAQPLKNRQVRGFPK
1KOP Chain:A ((2-223))
--THWGYTGHDSPESWGNLSEEFRLCSTGKNQSPVNITE---TVSGKLPAIKVNYKPSM-VDVENNGHTIQVNYPEG--GNTLTVNG--RTYTLKQFHFHV------PSENQIKGRTFPMEAHFVHLDEN-----------KQPLVLAVLYEAGKTNGRLSSIWNVMPMTA--GKVKLNQPFDASTLLPKRLKYYRFAGSLTTPPCTEGVSWLVLKTYDHIDQAQAEKFTRAVG---------S-ENNRPVQPLNARVVIE---
General information:
TITO was launched using:
RESULT:
Template:
1KOP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94425 for 1698 contacts (-55.6/contact) +
2D Compatibility (PS) -23592 + (NN) -12177 + (LL) 1572
1D Compatibility (HY) -12800 + (ID) 3750
Total energy: -145172.0 ( -85.50 by residue)
QMean score : 0.286
(partial model without unconserved sides chains):
PDB file :
Tito_1KOP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KOP-query.scw
PDB file :
Tito_Scwrl_1KOP.pdb
: