Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
4LAY Chain:A ((52-157))
-GVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF-
General information:
TITO was launched using:
RESULT:
Template:
4LAY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54811 for 776 contacts (-70.6/contact) +
2D Compatibility (PS) -11558 + (NN) -4766 + (LL) 312
1D Compatibility (HY) -10400 + (ID) 2500
Total energy: -83723.0 ( -107.89 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_4LAY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LAY-query.scw
PDB file :
Tito_Scwrl_4LAY.pdb
: