Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVVVQRVKEASVTNDT-LNNQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
1J7G Chain:A ((1-144))
MIALIQRVSQAKVDVKGETIGKIGKGLLVLLGVEKEDNREKADKLAEKVLNYRIFSDENDKMNLNVQQAQGELLIVSQFTLAADTQKGLRPSFSKGASPALANELYEYFIQKCAEKL-PVSTGQFAADMQVSLTNDGPVTFWLNV------
General information:
TITO was launched using:
RESULT:
Template:
1J7G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59344 for 1124 contacts (-52.8/contact) +
2D Compatibility (PS) -15692 + (NN) -6192 + (LL) 436
1D Compatibility (HY) -12400 + (ID) 3050
Total energy: -96242.0 ( -85.62 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_1J7G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J7G-query.scw
PDB file :
Tito_Scwrl_1J7G.pdb
: