Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNKNIVIKSMAALAILTSVTGINAAVVEETQQIANAEKNVTQVKDTNNFPYNGVVSFK--------DATGFVIGKNTIITNKHVSKDYKVGD-RITAHPNGDK---GNGGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAK--DAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDNILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQ |
2O8L Chain:A ((3-211)) | ----------------------------------LPNNDRHQITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQ-----NKHIGEVVKPATMSNNAETQTNQNITVTGYPGDKPV-ATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPN---EFNGAVFINENVRNFLKQNIE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2O8L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48573 for 1779 contacts (-27.3/contact) +
2D Compatibility (PS) -21365 + (NN) -9658 + (LL) 3736
1D Compatibility (HY) -10400 + (ID) 3000
Total energy: -89260.0 ( -50.17 by residue)
QMean score : 0.406
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