Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALVVKDIVKNFGEGLSETKVLKGINFEVEQGEFVILNGASGSGKTTLLTILGGLLSQTSGTVLYN--DAPLFDKQHRPSDLRLEDIGFIFQSSHLVPYLKVIEQLTLVGQEAGMTKQQSSTRAIQLLKNIGLEDRLN--------VYPHQ---LSGGEKQRVAIMRAFMNNPKIILADEPTASLDADRATKVVEMIRQQIKEQQMIGIMITHDRRLFEYADRVIELEDGKITD
3B5J Chain:A ((20-219))
--------------------ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD----PNWLRRQ-VGVVLQDNVLLNR-SIIDNISLA--NPGM----SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTV--IIIAHRLSTVKNADRIIVMEKGKIVE
General information:
TITO was launched using:
RESULT:
Template:
3B5J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112320 for 1415 contacts (-79.4/contact) +
2D Compatibility (PS) -19734 + (NN) -5055 + (LL) 2304
1D Compatibility (HY) -16400 + (ID) 3350
Total energy: -154555.0 ( -109.23 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_3B5J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3B5J-query.scw
PDB file :
Tito_Scwrl_3B5J.pdb
: