Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLNNYSLKVKNKQLVDNCDLNFYLGQINHIVGKNGVGKSLLAKDF--LLNN-SGNIPKSIS---QNVTLISSSSNIPNDI--TKDFLLSLLKSKF----ENNRQTFDKIYNILNIEAIPSNVLLKNLSDGQKQKLKLLSFLLEDHDLIILDEVTNALDKKTVNEIYEFLNDFIQSHQTKTIINITHNLSDLSALPGKYFIFKDLQIEEYQSKEEVINDYINL
1V43 Chain:A ((13-241))
VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ--HMTVYENIAFPL--KKFPKDEIDKRVRWAAELLQIEELL-NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK-LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN--
General information:
TITO was launched using:
RESULT:
Template:
1V43.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81780 for 1590 contacts (-51.4/contact) +
2D Compatibility (PS) -21343 + (NN) -1040 + (LL) 276
1D Compatibility (HY) -5600 + (ID) 2000
Total energy: -111487.0 ( -70.12 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_1V43.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V43-query.scw
PDB file :
Tito_Scwrl_1V43.pdb
: