Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSNKNKSYDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETWDFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTPDVNGFR--QEGFGPFDSQ-VHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYEG-RRATGVTYKK--NGKLHTIDAN-EVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRVHLPGVGENFEDHLEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEGGGFVRSNNEVDYPNLMFHFL--PIAVRYDGQ-KAAVAHGYQVHVGPMYSNSRGSLKIKSKDPFEKPSIRFNYLSTE--EDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTDEEILDWVRRDGETALHPSCSAKMGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIRGRKPLEPQYIDYYKHGVHDENEGAIEVKPYAK |
| 2JBV Chain:A ((9-527)) | --LSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRG-VPEVLQLDRWM-ELLESGYDWDYPIEPQENG-NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRA-KFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPMVAES--T---------QWWE--IGIFT----------PTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPEL-RVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIR-------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2JBV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -134133 for 4858 contacts (-27.6/contact) +
2D Compatibility (PS) -54176 + (NN) -23509 + (LL) 2856
1D Compatibility (HY) -19200 + (ID) 8700
Total energy: -236862.0 ( -48.76 by residue)
QMean score : 0.494
|
|
|