Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKIQKIHPNALIPKYQTEGSSGFDLHAVEEVVIKPHSVGLVRIGICLSLEVGYELQVRTRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSD-KDFKVQVGDRIAQGVVQKTYKAEFIECEQLDETSRGSGGFGSTGVSKA
1SM8 Chain:B ((25-156))
--LAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLA------------
General information:
TITO was launched using:
RESULT:
Template:
1SM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67106 for 881 contacts (-76.2/contact) +
2D Compatibility (PS) -13787 + (NN) -701 + (LL) 84
1D Compatibility (HY) -8800 + (ID) 2500
Total energy: -92810.0 ( -105.35 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_1SM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM8-query.scw
PDB file :
Tito_Scwrl_1SM8.pdb
: