Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGDLKLRPLEREDLKFVHRLNNDAKIMSYWFEEPYEAFVELQELYDKHIHDQSERRFILE-LDGQMVGLVELMEIDYIHRRAEFQIIIDPKFQGHGYAVSATKLAMKYAFHVLNMHKLYLVVDKVNEKAIHVYEKVGFIREGELIDEFFVDGTYHDAIRMCIFQHQYREMDI
4MHD Chain:A ((26-195))
-NSQLTLRALERGDLRFIHNLNNNRNIMSYWFEEPYESFDELEELYNKHIHDNAERRFVVEDAQKNLIGLVELIEINYIHRSAEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGFVEEGHLVEEFFINGRYQDVKRMYILQSKYLNR--
General information:
TITO was launched using:
RESULT:
Template:
4MHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96384 for 1183 contacts (-81.5/contact) +
2D Compatibility (PS) -17958 + (NN) -6806 + (LL) 336
1D Compatibility (HY) -21200 + (ID) 4750
Total energy: -146762.0 ( -124.06 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_4MHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MHD-query.scw
PDB file :
Tito_Scwrl_4MHD.pdb
: