Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRTIDSSSKKDGFRM-PGEFEKHAGCYIIWPERPDNWRLGAKPAQKAFVDVATAISHFEPVTVVASSSQYVNARYMLSDEIRVVEMD-N-DDAWVRDSGPTFVVNDSGD-VRGVDWSFNSWGGLVDGLYFPWDKDDQVAQKICELERKDRYRLADF-VLEGGSIHVDGEGTLVTTEECLLSEGRNPQL-SKQQIEMVLKEYLNLEKIIWLKRGIYLDE-TNGHVDN-IFNYVRPGVVALAWTDDETDPQYEISKECFDILSNETDAKGRKLEVHKINVPKPILITDEESKGVDAVEGTLPREEGDRLAASYINYYTANGGVIFPLFGDP-NDELAREKLQQLYPNCEVVGVK-AREILLGGGNIHCITQQVPR--- |
| 1VKP Chain:A ((5-376)) | -----RESPAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASPAQWENARKQLPEDIRVVE--MSMNDSWFRDSGPTFIVRKRNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQ--HSMILEGGSIHVDGEGTCLVTEECLLNKNRNPH-MSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMC-CFARPGVVLLSWTDDETDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAPQFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPT |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VKP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -131442 for 3095 contacts (-42.5/contact) +
2D Compatibility (PS) -39336 + (NN) -22172 + (LL) 1248
1D Compatibility (HY) -28000 + (ID) 9850
Total energy: -229552.0 ( -74.17 by residue)
QMean score : 0.471
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