Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIFPSMGTLETTANLLAGTSFGFGPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGDETL--VRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG
3YPI Chain:B ((29-244))
-------------------------ASIP-----ENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGQSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLE--EVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPE-FVDIIN-------
General information:
TITO was launched using:
RESULT:
Template:
3YPI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107950 for 1690 contacts (-63.9/contact) +
2D Compatibility (PS) -23379 + (NN) -13082 + (LL) 2724
1D Compatibility (HY) -16800 + (ID) 3650
Total energy: -162137.0 ( -95.94 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_3YPI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3YPI-query.scw
PDB file :
Tito_Scwrl_3YPI.pdb
: