Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------VNDIIHDYLLKNIP-KSSPFFKELEAYAKENEVPIMEPDSLYCLLQILDIQKPKRILELGTAIGYSALKMADKLPD-AEIITVERDEERYEQAIHNIQRYGASDRVKVLLTDAIEGAEEILAHGPFDAIFIDAAKAQYEKFFHIYTVSLAENGVIYSDNVLFKGLALDMTPEKQRKLRVARKMRHFNDFLVTHPDFETTTIPLGDGLSISKRKKTGGVS
4PCA Chain:A ((6-226))
HHHMRNVSLSKQDEYLNKLFAVDTEGALKAHKTAPSELRMAQLGTVEGQMLQLLIRMAGIHSIVEVGTCVGFSAICMAHALPSKGHIYTIEKDYENVVTANQNIVNCKLEDKITVLHGEALAQLNTLKEMAPFDMIFIDANKSSYLAYLNWAKMYIRKGGLIVADNTFLFGSVFDEHPTEKVSSNAHASMRAFNDELANKEKYLSTIIPTSEGMMVSIKLT-----
General information:
TITO was launched using:
RESULT:
Template:
4PCA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88846 for 1770 contacts (-50.2/contact) +
2D Compatibility (PS) -22808 + (NN) -11212 + (LL) -128
1D Compatibility (HY) -12000 + (ID) 2850
Total energy: -137844.0 ( -77.88 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_4PCA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PCA-query.scw
PDB file :
Tito_Scwrl_4PCA.pdb
: