Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LDKKFLLTNSTIGIIGGGQLGRMLALAAKAMGYRIIVLDPTADCPAAQVSDEQIIADYDDKVALRELSEKADVVTYEFENIDYDALKMTQNLVS-VPQGSELLSITQDRILEKAYLESANINIAPYAVIVEQDEIENEIKSIGYPAVLKTAQGGYDGKGQVVIHDARDIETAARLLRYGSCVLEAWIPFEKEISVVVARNLDGQIETFPVAENVHVNNILHTTMVPADVAADVYEEAEEIARKLAEVLQLCGVLAVEMFVTKSGAIYVNELAPRPHNSGHFTIEACSISQFTQHIRAIVGLPLVKPELLKPAVMINILGQHV-D-----AVNKQMVNYPHWFVHYYGKKEAKINRKMGHVTVLADEPKAVIQDLEETQIWK |
| 3AX6 Chain:A ((1-367)) | --------MKKIGIIGGGQLGKMMTLEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEHIDVQTLKKLYNEGYKIHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKDLES---DVREFGFPVVQKARKG-----GVFIIKNEKDLENAIK----GETYLEEFVEIEKELAVMVARNEKGEIACYPVVEMY------DTVIAPARIEEKYSKIAREIATSVVEALEGVGIFGIEMFLTKQGEILVNEIAPRPHNSGHYTIEACVTSQFEQHIRAIMNLPLGSTELLIPAVMVNLLGEEGYYGKPALIGLEEALAIEGLSLHFYGKKETRPYRKMGHFTVVDRDVERALEKALRAKKI- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AX6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -211837 for 2971 contacts (-71.3/contact) +
2D Compatibility (PS) -38027 + (NN) -16135 + (LL) 1792
1D Compatibility (HY) -31200 + (ID) 7300
Total energy: -302707.0 ( -101.89 by residue)
QMean score : 0.538
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