Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
4JL5 Chain:B ((3-203))
--LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKH---GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG--
General information:
TITO was launched using:
RESULT:
Template:
4JL5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61988 for 1537 contacts (-40.3/contact) +
2D Compatibility (PS) -21846 + (NN) -13289 + (LL) 576
1D Compatibility (HY) -18400 + (ID) 4150
Total energy: -119097.0 ( -77.49 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_4JL5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JL5-query.scw
PDB file :
Tito_Scwrl_4JL5.pdb
: