Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLVATA-PRVAVLVEYNDREVLEDEVKIKVQFASPKHGTEVVDFRGISPFIDEEFSPEWNLFVSRETNSARGIVFGEFQLGNMVVGEVVERGSKVTEYALGDIVCS----------------------------------------------YGPIMETVIVKAVDNYKLRKLPKGANWKNAVCYD-PAQFAMSGVRD-AHVRAGDYVVVVGLGAIGQIAIQLAKKAGASVVIGVDPLSHRREIAEKHGADATFDPITTDVGLEVKRLTGKLGADSIIETSGNAAALQAALRGIAYGGTISYVAFAKPFP-EGFNLGREAHFNNAKIVFSRAASEPNPDYPRWDRKRIEETCWELLMNGYLDCSDIIDPVVPFADSAESYMKYVDQQPDLSIKMGITL |
| 1F8F Chain:A ((7-370)) | IIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCH-TDLIVRDQKYPV------------------------PLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCVNDHFFAQSSFATYALSRE-NN--TVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITD-GGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDV-NDLLLGGKTILGVVEGSG--------SPKKFIPELVRLYQQGKFPFDQL-VKFYAFDEINQAAID-SRKGI--TLKPIIKI |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F8F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158013 for 2690 contacts (-58.7/contact) +
2D Compatibility (PS) -34128 + (NN) -11946 + (LL) 1804
1D Compatibility (HY) -9200 + (ID) 3250
Total energy: -214733.0 ( -79.83 by residue)
QMean score : 0.473
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