Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTVNLDWDNLGFAYRKLPFRYISHFKDGKWDDGKLTDDATLHISESSPALHYGQQAFEGLKAYRTKDGSIQLFRPDQNAERLQRTADRLLMP-HVPTDKFIAAVKSVVRANEEFVPPYGTGATLYIRPLLIGVGDIIGVKPAEE--YIFTVFAMPVGSYFKGGLTPTNFIVSKEYDRAAPNGTGAAKVGGNYAASLLPGKYAHEKQFSDVIYLDPATHTKIEEVGAANFFGITKDNQFITPLSPSILPSITKYSLLYLAKERFGMEAIEGDVFVDELDKFTEAGACGTAAVISPIGGIQNGDDFHVFYSETEVGPATRKLYDELVGIQFGDVEAPEGWIYKVD- |
1A3G Chain:A ((4-308)) | ------------------------KADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIRKNN--------LTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPW--------QGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDV--NGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKEL-GIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVDG-----IQVGEGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQVNQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1A3G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89794 for 2409 contacts (-37.3/contact) +
2D Compatibility (PS) -31076 + (NN) -13282 + (LL) 2012
1D Compatibility (HY) -12800 + (ID) 4450
Total energy: -149390.0 ( -62.01 by residue)
QMean score : 0.436
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