Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKGLMISFEGPDGAGKTTVLEAVLPLLREKLSQDILTTREPGGVTISEEIRHIILDVKHT---QMDKKTELLLYMAARRQHLVEKVLPALEEGKIVLMDRFIDSSVAYQGSGRGLDKSHIKWLNDYATDSHKPDLTLYFDVPSEVGLERIQKSVQREVNRLDLEQLDMHQRVRQGYLELADSEPNRIVTIDASQQLDEVIAETFSIILDRINQ--
4TMK Chain:A ((2-211))--RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARAR--GELDRIEQESFDFFNRTRARYLELAAQD-KSIHTIDAT-QPLEAVMDAIRTTVTHWVKEL


General information:
TITO was launched using:
RESULT:

Template: 4TMK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71249 for 1647 contacts (-43.3/contact) +
2D Compatibility (PS) -22456 + (NN) -12141 + (LL) 564
1D Compatibility (HY) -11200 + (ID) 3950
Total energy: -120432.0 ( -73.12 by residue)
QMean score : 0.572

(partial model without unconserved sides chains):
PDB file : Tito_4TMK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4TMK-query.scw
PDB file : Tito_Scwrl_4TMK.pdb: