Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIQRVNQASVSIEDDVVGSIEKGLVLLVGIAPEDTTEDIAYAVRKITSMRIFSDDEGKMNLSIQDIKGSVLSISQFTLFADTKKGNRPAFTGAADPVKANQFYDIFNQELA-NHVSVETGQFGADMQVSLINDGPVTIVLDTKNK
1JKE Chain:A ((1-145))
MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANRLCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQEMNTQTGRFAADMQVSLVNDGPVTFWLQV---
General information:
TITO was launched using:
RESULT:
Template:
1JKE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90216 for 1101 contacts (-81.9/contact) +
2D Compatibility (PS) -15563 + (NN) -6683 + (LL) 48
1D Compatibility (HY) -14000 + (ID) 3400
Total energy: -129814.0 ( -117.91 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_1JKE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JKE-query.scw
PDB file :
Tito_Scwrl_1JKE.pdb
: