Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSRGLVRFFFSILAVGALITSIV--GFALKWGEYRGLFLTFEAGQIFSVLFWFIGVGMIFSVISQMG---FFVFLTVHRFALEILRSSSLWNLLQLFFI---LFVAFDLMYVRFLFFGESGESLAGYAWLPVFLLIFGVITA---YIKQKQSSKKTFVSSLFLMVVITALEWFPAL-------RVNDEDWLYLMLF------PLMACNAFQLLMLPKFAAK----
1I6V Chain:A ((6-229))
LKAPVF-TATTQGDHYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLDPKMASTTLILRAEGPKEVRAVDFTPSADVEIMNPDLHIATLE-EGGKLYMEVRVDRGVGYVPAERHGIKDRINAIPVDAIFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVAILKEHLNYFANPE
General information:
TITO was launched using:
RESULT:
Template:
1I6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -231378 for 1376 contacts (-168.2/contact) +
2D Compatibility (PS) -19986 + (NN) 6512 + (LL) 348
1D Compatibility (HY) -3200 + (ID) 1400
Total energy: -249104.0 ( -181.03 by residue)
QMean score : 0.071
(partial model without unconserved sides chains):
PDB file :
Tito_1I6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1I6V-query.scw
PDB file :
Tito_Scwrl_1I6V.pdb
: