Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKTGYFLLEDGNKIEFELYPEAAPGTVANFEKLAN--EGF-YDGLTFHRVIPGFVSQGG-CPHGTGTGGPG-YTIKCETEGNPHTHEA-GALSMAHAGKDTGGSQFFIVHEPQPHLNGVHTVFGKVTSGLEFAKNM-----SNGDVMKEVRVEG
1YND Chain:B ((19-158))------------RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITI--


General information:
TITO was launched using:
RESULT:

Template: 1YND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 617 26200 42.46 203.10
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain B : 0.77

3D Compatibility (PKB) : 42.46
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.531

(partial model without unconserved sides chains):
PDB file : Tito_1YND.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1YND-query.scw
PDB file : Tito_Scwrl_1YND.pdb: