Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKLAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLNLIQFIGVKRPGFH-VE--T--------PYPLLFADVPEFEVSSTMIRERFKSKKPTDYLIPDKVKKYVEENGLYES
4YBR Chain:A ((4-201))GRRLGVMGGTFDPIHYGHLVAASEVADLFDLDEVVFVPSGQP-----RQVSAAEHRYLMTVIATASNPRFSVSRVDIDRGGPTYTKDTLADLHALHPDSELYFTTGADALASIMSWQGWEELFELARFVGVSRPGYELRNEHITSLLGQLAKDALTLVEIPALAISSTDCRQRAEQSRPLWYLMPDGVVQYVSKRRLYT-


General information:
TITO was launched using:
RESULT:

Template: 4YBR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 914 -75059 -82.12 -410.16
target 2D structure prediction score : 0.73
Monomeric hydrophicity matching model chain A : 0.77

3D Compatibility (PKB) : -82.12
2D Compatibility (Sec. Struct. Predict.) : 0.73
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.550

(partial model without unconserved sides chains):
PDB file : Tito_4YBR.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4YBR-query.scw
PDB file : Tito_Scwrl_4YBR.pdb: