Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKAKFQRTKPHVNIGTIGHVDHGKTTLTAAITKVLHDK-FPDLNETKAFDQ---------------IDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELLELVEMEVRELLAAQEFDEDAPVVRVSALKALEGD--------AKWV--ASVEELMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVVTKPGT-TTPHTEFEGQVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVT-------------LPEGTEMVMPGDNTNISVKLIQPVAMDEGL------RFAIREGGRTVGAGRVTKIIK |
1SKQ Chain:B ((4-427)) | ---------KPHLNLIVIGHVDHGKSTL---VGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEE-----------MRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNK--VRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQL-ELPPKPV---DKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFM---PAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVV-----WHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDV-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SKQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -153006 for 2812 contacts (-54.4/contact) +
2D Compatibility (PS) -38732 + (NN) -19121 + (LL) 2812
1D Compatibility (HY) -28800 + (ID) 6750
Total energy: -243597.0 ( -86.63 by residue)
QMean score : 0.495
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