Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPIPAPSPDARAVVTGASQNIGAALATELAARGHHLIVTARREDVLTELAARLADKYRVTVDVRPADLADPQERSKLADELAAR--PISILCANAGTATFGPIASLDLAGEK--TQVQLNAVAVHDLTLAVLP--GMIERKAGGILISGSAAGNSPIPYNATYAATKAFVNTFSESLRGELRGSGVHVTVLAPGPVRTELPDASEASLVEKLVPDFLWISTEH-----TARVSLNALERNKMRVVPGLTSKAMSVASQYAPRAIVAPIVGAFYKRLGGS
3QRW Chain:B ((29-241))
-----------ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-GVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGR--LGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPM-----AASVREHYSDIWEVSTEEAFDRITARV-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3QRW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123525 for 1614 contacts (-76.5/contact) +
2D Compatibility (PS) -21990 + (NN) -11006 + (LL) 3700
1D Compatibility (HY) -12000 + (ID) 3600
Total energy: -168421.0 ( -104.35 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_3QRW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QRW-query.scw
PDB file :
Tito_Scwrl_3QRW.pdb
: