Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAILNILEFPDPRLRTIAKPV---EVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEP-------RVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA
1VEV Chain:A ((1-171))
-SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLDS------
General information:
TITO was launched using:
RESULT:
Template:
1VEV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75213 for 1248 contacts (-60.3/contact) +
2D Compatibility (PS) -16903 + (NN) -2048 + (LL) 856
1D Compatibility (HY) -15600 + (ID) 3450
Total energy: -112358.0 ( -90.03 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_1VEV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VEV-query.scw
PDB file :
Tito_Scwrl_1VEV.pdb
: