Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLGVAVDQVNVKATTTERLGFTGREEGIAVHAVALLMAR
3JVH Chain:B ((24-178))
FRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHF---------ADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVV--
General information:
TITO was launched using:
RESULT:
Template:
3JVH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124762 for 1253 contacts (-99.6/contact) +
2D Compatibility (PS) -16066 + (NN) -9771 + (LL) -12
1D Compatibility (HY) -15200 + (ID) 4400
Total energy: -170211.0 ( -135.84 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_3JVH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JVH-query.scw
PDB file :
Tito_Scwrl_3JVH.pdb
: