Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEQTPEQPSTAPNPALQRQRASQLAQALRTELQKALIGQGAVIDDVLTAL--------------LAGGHVLVEGVPGLGKTLLVRALARCFDGGFARIQFTPDLMPSDVTGHAVYDLASEQFKLRKGPVFTHLLLADEINRAP---AKTQAALLEVMQERQVTLEGRALPVPQPFMVLATQNPIEQEGTYPLPEAELDRFMLKLRIDYPAEAEEQTLVRQVTRSARSDMLDVANLRPLLKDKDVLALQRIASDLPIDDQVLDYAVRLARTTRNWPGLALGAGPRASIALVRCGRARALLRGGEFVVPDDIKGCALAVLRHRVRLSPELDIEGLSVDQVLQQLLDQVPAPRV |
| 3VFD Chain:A ((114-300)) | ---------------------------------FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL---------GEKLV-RALFAVA-RELQPSIIFIDQVDSLLDASRRLKTEFLIEFDGVQ------------RVLVMGATNRPQ-----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VFD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -79407 for 1088 contacts (-73.0/contact) +
2D Compatibility (PS) -16123 + (NN) -9556 + (LL) 13196
1D Compatibility (HY) -7600 + (ID) 1450
Total energy: -100940.0 ( -92.78 by residue)
QMean score : 0.459
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