Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MEIWDAYDQYGFITGLTLNRDQNIPQGLFHLVVDVILFHEDGDVLMMKRHPKKKAFPAYFEATAGGSALKGENAKQAILRELKEETGIVPQCLTFLNREWFSERSYFVDHFIAKYNGAKDI-ITLQEGETVDYIWLKPEYIDLFLSKNKLIPSQIKLLKSLI-----
1Q27 Chain:A ((1-171))
MGGVSDERLDLVNERDEVVGQILRTDPA-LRWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSSFMCVYELRSDATPIFNPNDISGGEWLTPEHLLARIAAGEAAKGDLAELVRRCYREEE
General information:
TITO was launched using:
RESULT:
Template:
1Q27.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42981 for 1120 contacts (-38.4/contact) +
2D Compatibility (PS) -17231 + (NN) -8782 + (LL) 204
1D Compatibility (HY) 1200 + (ID) 1700
Total energy: -69290.0 ( -61.87 by residue)
QMean score : 0.173
(partial model without unconserved sides chains):
PDB file :
Tito_1Q27.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q27-query.scw
PDB file :
Tito_Scwrl_1Q27.pdb
: