Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNRDFRVRDQLETFGVRVSALIIENQKLLLIYAP-HLDKYYLPGGALQVGEDSNKAVAREVLEEIGLHSQVGDLAYIVEN------QFNIKR-HHYHSVEFLYFVNLLGQAPESIKEGTHKRHFVWLPIKELTKIDCNPNFLAQDLIEWPGHVVHKIVQN
3OGA Chain:A ((24-154))
-----------AMRQRTIVCPLIQNDGCYLLCKMAD--GQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTY--GRQEEIYMIYLIFDCVSANR-DICI--NDEFQDYAWVKPEELALYDLNVATRHTLALKGLL---------
General information:
TITO was launched using:
RESULT:
Template:
3OGA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54992 for 756 contacts (-72.7/contact) +
2D Compatibility (PS) -12085 + (NN) 215 + (LL) 2576
1D Compatibility (HY) -5600 + (ID) 1200
Total energy: -71086.0 ( -94.03 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_3OGA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OGA-query.scw
PDB file :
Tito_Scwrl_3OGA.pdb
: