Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIIGLTGGIASGKSTVTKIIRESGFKVIDADQVVHKLQAKGGKLYQALLEWLGPEILDADGELDRPKLSQMIFANPDNMKTSARLQNSIIRQELACQRDQLKQTEEIFFVDIPLLIEEKYIKWFDEIWLVFVDKEKQLQRLMARNNYSREEAELRLSHQMPLTDKKSFASLIINNNGDLITLKEQILDALQRL------------
1JJV Chain:A ((1-205))
MTYIVGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILN------RAALRERVFNHDEDKLWLNNLLHPAIRERMKQKLA--EQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSA-----NFEQIQRIMNSQVSQQERLKWADDVINNDAELAQNLPHLQQKVLELHQFYLQQAENKN
General information:
TITO was launched using:
RESULT:
Template:
1JJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85882 for 1316 contacts (-65.3/contact) +
2D Compatibility (PS) -20047 + (NN) -10619 + (LL) 572
1D Compatibility (HY) -13600 + (ID) 2700
Total energy: -132276.0 ( -100.51 by residue)
QMean score : 0.664
(partial model without unconserved sides chains):
PDB file :
Tito_1JJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJV-query.scw
PDB file :
Tito_Scwrl_1JJV.pdb
: