Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQDYISYIRSKVGHETIFLTYSGGILTDGKGRVLLQLRAD-KNSWGIIGGCMELGESSVDTLKREFFEETGLRVEPIRLLNVYTNFQDSYPNG-----------DKAQTVGFIYEVSCPKP-VNIEG----FHNEETLQLDYFSKEDVKNITIVNEQHQLILDEYFSQTFQMGR
1F3Y Chain:A ((6-161))
-----------MDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYD-FPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLID--LTVEFKKPVYKEVLSVFAPHL-
General information:
TITO was launched using:
RESULT:
Template:
1F3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37358 for 1053 contacts (-35.5/contact) +
2D Compatibility (PS) -14390 + (NN) -1922 + (LL) 1312
1D Compatibility (HY) -1200 + (ID) 1200
Total energy: -54758.0 ( -52.00 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_1F3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F3Y-query.scw
PDB file :
Tito_Scwrl_1F3Y.pdb
: