Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNPTLILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPK-YSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRR---NHCGIASAASYPTV |
| 1S4V Chain:A ((1-219)) | ----------------------------------------------------------------------------------------------------------------TVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTD-QNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTG-SCGT-ELDHGVAIVGYGTT---IDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1S4V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -79564 for 1865 contacts (-42.7/contact) +
2D Compatibility (PS) -23420 + (NN) -15714 + (LL) 8992
1D Compatibility (HY) -16800 + (ID) 5700
Total energy: -132206.0 ( -70.89 by residue)
QMean score : 0.461
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