Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELAVGNNAPDFSLPTD--SGENLSLSDFFDKKNIVLYFYPKDDT-PGCTLEAKGFRDKINDFSSLDTVIIGASRDSIKCHASFKAKYSLPFYLISDENAKMLEKYGVWVEKSMFGKKYMGIE-RTTFLIDKKDKIVRIWENVKVSGHVNEVLEAVKKI
3GKN Chain:A ((6-159))
-DAVLELPAATFDLPLSLSGGTQTTLRAHAGH-WLVIYFY-PKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQ-VLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH
General information:
TITO was launched using:
RESULT:
Template:
3GKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63361 for 1097 contacts (-57.8/contact) +
2D Compatibility (PS) -16101 + (NN) -6906 + (LL) 224
1D Compatibility (HY) -10000 + (ID) 2650
Total energy: -98794.0 ( -90.06 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_3GKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GKN-query.scw
PDB file :
Tito_Scwrl_3GKN.pdb
: