Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKMINKLIVPVTASALLLGACGASATDSKENTLISSKAGDVTVADTMKKIGKDQIANASFTEMLNKILADKYKNKVNDKKIDEQIEKMQKQYG--GKDKFEKALQQQ-GLTADKYKENLRTAAYHKELLS---DKIKISDSEIKEDSK-------KASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALFK---LKDGEVSEVVKSSFGYHIIKADKPTDFNSEKQSLKEKLVDQKVQKNPKLLTDAYKDLLKEYDVDFKDRDIKSVVEDKILNPEKLKQGGAQGGQSGMSQ |
| 3NRK Chain:A ((50-361)) | ---LNRVIATV-------GTVSISELDLDDATEKYNRLQKHLKHEDYRKSFRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKRMEVMGITNRKQFEKTMETSSGMPFELWVTELPYQIKKGQLLQLKIAVPPPNEQEIRSWYNQNKDKVGFEIRYRIISIAPENDSIQEENRLYKEVSEIRKSILAD-PSSFALIAGSPRNDPALRARRGMVEWISSFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCILKIEGKRPTPMENLRGGIQNILYRDKEEDTFHRWLKESRAEIPIQIFDEAYRKENKIPLKEETFHL------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3NRK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 73288 for 1955 contacts (37.5/contact) +
2D Compatibility (PS) -32088 + (NN) -10925 + (LL) 1160
1D Compatibility (HY) -3600 + (ID) 2450
Total energy: 25385.0 ( 12.98 by residue)
QMean score : 0.415
|
|
|