Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAKKGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELMNRLTGRRICESCGTTYHLVFNPPKVEGICDIDGGKLYQREDDNPETVANRLSVNIKQSKPILDFYDQKGVLKNIDGSKDISDVTKDVIDILDHL
4JLP Chain:A ((1-202))
MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHG---NVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQKEDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVI---
General information:
TITO was launched using:
RESULT:
Template:
4JLP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70990 for 1553 contacts (-45.7/contact) +
2D Compatibility (PS) -21680 + (NN) -10397 + (LL) 928
1D Compatibility (HY) -20400 + (ID) 4400
Total energy: -126939.0 ( -81.74 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_4JLP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JLP-query.scw
PDB file :
Tito_Scwrl_4JLP.pdb
: