Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSN-DSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK |
| 2YGT Chain:A ((11-292)) | ----------------------IRKE-ENGNVTIITQNNKQIRKYSSTDSATTK-SNSKITVDASFVDDKFSSEMTTIISLKGFIPSGRKIFAL-SKYRGVMRWPIKYMVDLKNNSLDSSVKIVDSVPKNTISTKEVNNTISYSIGGGIDTSN--KASLNANYAVSKSISYVQPDYNTIQTND-TNSIASWNTEFAET-R---DGYNVNSWNIVYGNQMFMRSRYS-GTSTTNFTPDYQLSSLITGGFSPNFGVVLTAPNGT-KKSQIEISLKREINSYHIAWD-TEWQGRNYPDSKIE-ETVKFELDWEKHTIRQIS-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YGT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -39520 for 2288 contacts (-17.3/contact) +
2D Compatibility (PS) -30137 + (NN) -11042 + (LL) 2588
1D Compatibility (HY) -8800 + (ID) 4000
Total energy: -90911.0 ( -39.73 by residue)
QMean score : 0.380
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