Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEFYASLKSIAMHVPSERVKNAEFQQFLDTSDEWIEKRTGIKERRFANDEEKSSDLGVIAAKQAIERAHLTPQDIDLVVVATLSPDFLAMPSTACVLSAKLGIENKPAFDISAACTGFIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTCILFGDGAGACVIGRTKRLKESVLDVQISANGNFSNYLYTPRTLKPTPFNAKEEALEPFLRMKGNEVFKLAVKTLLKDVETILEKNALKPEDVRLFIPHQANFRIIQAVREHLDFKDEQVVLTVHKYGNTSAASIPMAMCEAYEEGRLKKGDLMLLDAFGGGLTWGSALVYFGGI |
2EBD Chain:A ((2-309)) | ---GTKIIGTGVYLPKNVLTNFDLEKIVDTSDEWITTRTGIKERRIA-KEETITYMATQAAKEALREANLSPEELDLIILATLTPQKR-FPSTACLVQAQLKAKGVYAFDISAACSGFIYALDIADSFIKSGKAKNVLVIGAEKLSEAVDWEDRSTCVLFGDGAGAVVVTRSED-KSDILATRMYAEGSLEELLHADNC--------------GYIRMKGRELFKVAVRSMEEVCREVLEKAGVKPEEVSLVIPHQANVRIINALAEKLNIPKEKVFVNIQKYGNTSAASIPIALHEAIKEGKVKRGDLILMTAMGGGLTWGAVLLRY--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2EBD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -233696 for 2913 contacts (-80.2/contact) +
2D Compatibility (PS) -32647 + (NN) -11062 + (LL) 1448
1D Compatibility (HY) -32000 + (ID) 7250
Total energy: -315207.0 ( -108.21 by residue)
QMean score : 0.512
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