Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLAKMSFMQNVKNIQEVDVNHKRVLIRVDFNVPLDENLNITDDTRIRESLPTIQFCIDNKAKDIILVSHLGRPKGVEEKLSLKPFLKRLERLLNHEVVFSQNIAQ--LKQALNENAPTRIFLLENIRFLKGEEE-------NDENLAKDLASLCDVFVNDAFGTSHRKHASTYGTAKFAPIKVSGFLLKKEIDSFYQAFNHPLRPLLLIVGGAKVSSKLTLLKNILDL--IDKLIIAGAMSNTFLKALGYDVQDSSVED-------ALINDALELLQSAKEKKVKVYLPIDAVTTDDILNPKHIK-ISPVQDIEPKHKIADIGPASLKLFSEVIESAPTILWNGPLGVHEKQEFARGTTFLAHKIANTYAFSLIGGGDTIDAINRAGEKDNMSFISTGGGASLELLEGKILPCFEVLDKRH |
| 2CUN Chain:A ((1-401)) | ----------MFRLEDFNFHNKTVFLRVDLNSPMK-DGKIISDARFKAVLPTIRYLIESGAK-VVIGTHQGKPYSE-DYTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFARIKPM-IMGFLMEKEIEALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKKKGLLDYVKHAEEILDEF---YPYIRTPVDFAVDYKGERV-EIDLLSENRGLLHQYQIMDIGKRTAEKYREILMKARIIVANGPMGVFEREEFAIGTVEVFKAIADSPAFSVLGGGHSIASIQKYGI-TGITHISTGGGAMLSFFAGEELPVLRALQISY |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CUN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -243153 for 3499 contacts (-69.5/contact) +
2D Compatibility (PS) -40812 + (NN) -16039 + (LL) 1708
1D Compatibility (HY) -26800 + (ID) 6050
Total energy: -331146.0 ( -94.64 by residue)
QMean score : 0.543
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