Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKTWEEFLKQE-AKQPYFIELMEAVKDARAKGNVYPSEEDMFSCFRLCPYNQVKVVILGQDPYHGPGQAHGLSFSVQKDVRIPPSLRNIYKELKTDLDIE-PADHGYLAKWAEQGVLLMNTSWSVEEGKAGSHKKLGWATFTDHVLEELNNYDKPLVFILWGNHAIKAASGITNPQHLIIKGVHPSPLAAS-------RGFFGSKPFSKTNAFLEEHERKPIDWDLNEQ
2J8X Chain:A ((6-231))
LPDLWLDFLQLSPIFQRKLAAVIACVRRLRTQATVYPEEDMCMAWARFCDPSDIKVVILGQDPYHG-GQANGLAFSVAYGFPVPPSLRNIYAELHRSLPEFSPPDHGCLDAWASQGVLLLNTILTVQKGKPGSHADIGWAWFTDHVISLLSERLKACVFMLWGAKAGDKASLINSKKHLVLTSQHPSPLAQNSTRKSAQQKFLGNNHFVLANNFLREKGLGEIDWRL---
General information:
TITO was launched using:
RESULT:
Template:
2J8X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100348 for 1730 contacts (-58.0/contact) +
2D Compatibility (PS) -23506 + (NN) -10823 + (LL) 4
1D Compatibility (HY) -22400 + (ID) 5050
Total energy: -162123.0 ( -93.71 by residue)
QMean score : 0.634
(partial model without unconserved sides chains):
PDB file :
Tito_2J8X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J8X-query.scw
PDB file :
Tito_Scwrl_2J8X.pdb
: