Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LNLKDTVKLANGVEMPRLGFGVWKVQD--GDEAVNSVKWAIEAGYISIDTAAAYKNEEGVGQAIK----ESGIKREDLFVTTKLWNAEQGYESTLAAFDESLRKLELDYVDLYLIHWPVKGK--------------------FKDTWRAFEKLYKDKRVRAIGVCNFHEHHLKELMEDA---EIAPMVNQIELHPQLTQEPLRKFCAENNIVVEAWSPLGNGK-----------LLSNPEIKAIADAHGKSVAQVILRWDLQIGVVTIPKSVHQERIIQNADIFDFELTEEEVAKISGLNKDERTGPDPDNFNF |
2HDJ Chain:B ((7-304)) | -----CVKLNDGHFMPVLGFGTYAPAEVPKSKALEAVKLAIEAGFHHIDSAHVYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWSNSHRPELVRPALERSLKNLQLDYVDLYLIHFPVSVKPGEEVIPKDENGKILFDTVDLCATWEAMEKCKDAGLAKSIGVSNFN-HRLLEMILNKPGLKYKPVCNQVECHPYFNQRKLLDFCKSKDIVLVAYSALGSHREEPWVDPNSPVLLEDPVLCALAKKHKRTPALIALRYQLQRGVVVLAKSYNEQRIRQNVQVFEFQLTSEEMKAIDGLNRNVR---------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2HDJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -126181 for 2182 contacts (-57.8/contact) +
2D Compatibility (PS) -28006 + (NN) -9999 + (LL) -84
1D Compatibility (HY) -25600 + (ID) 5800
Total energy: -195670.0 ( -89.67 by residue)
QMean score : 0.557
|
|
|