Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKEIKYAFVTGASGEIGQAICMSLARAGWNLYLHYYQNKETVEKLLPLLQAEEVDVILIQ---ADFDDL-ASLTEIEKQVFQLDAFIHAAGHAHYSLFQDTT--------DTNIAELWNVHMFMPMRLIRTFMPKLMKSSQGRIIFISSIWGEVGASMEVAYSTVKGAQIAFCRALSQEVGLSGITVNAVTPGVVETKMMDQFSEEEKDNLRQEIPLNRFAQPEEIAETVAFLTSKKASYITGEVLRLNGGWLM
3VZS Chain:B ((15-256))
-----RIAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPNSPRREKWLEQQKALGFDFIASEGNVADWDSTKTAFDKVKSEVGEVDVLINNAGITRDVVFRKMTRADWDAVIDTNLTSLFNV--------TKQVIDGMADRGWGRIVNISSVNGQKGQFGQTNYSTAKAGLHGFTMALAQEVATKGVTVNTVSPGYIATDMVKAIRQDVLDKIVATIPVKRLGLPEEIASICAWLSSEESGFSTGADFSLNGGLHM
General information:
TITO was launched using:
RESULT:
Template:
3VZS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -187392 for 1901 contacts (-98.6/contact) +
2D Compatibility (PS) -24848 + (NN) -7152 + (LL) 1408
1D Compatibility (HY) -14400 + (ID) 4100
Total energy: -236484.0 ( -124.40 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_3VZS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VZS-query.scw
PDB file :
Tito_Scwrl_3VZS.pdb
: