Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYE-YFPGFYDRLMDS---ELYDEWLEFSADFIGDAP--KKVLDLACGTAEFALRLSFSGHQVTGVDLSKEMVAVAKEKVAAAEIDLPIIEQDMSKLALKQTFDVVTCFCDSLNYLETEQALEATIQAVSAHLEPNGLFLFDVHSVFKIEQGFKDYSYGDSDEEISTIWNSFPGEHPHSIEHELTFYILGEDDTYNRVDELHKERTYPIATYENLLKKFGFTKIDIYADFSHEKPNKTSERIFFAARK--
4OQD Chain:A ((12-250))
ADYSGEIAELYDLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP----DAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFM--------PGGPSGRGLFTGLPGA
General information:
TITO was launched using:
RESULT:
Template:
4OQD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108166 for 1902 contacts (-56.9/contact) +
2D Compatibility (PS) -24932 + (NN) -10049 + (LL) 1072
1D Compatibility (HY) -6800 + (ID) 2500
Total energy: -151375.0 ( -79.59 by residue)
QMean score : 0.362
(partial model without unconserved sides chains):
PDB file :
Tito_4OQD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OQD-query.scw
PDB file :
Tito_Scwrl_4OQD.pdb
: