Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELVNVSKKIQDKLILEKVSLSIGAGEFIAVVGESGSGKTTLLNVIGHLDSKDSGQVIINEMEYQTKKEVMTLKKEVLGFIFQNYLLMENETVLENLSITG-GENRKLMIEHLEEVG-------MDESY---LAKKVYQLSGGEKQRIAIVRILLKPFQLLLADEPTGNLDDKNKQKIIELFLALKKQGKTIVCVTHDPEISAKADRIIYIEGGEIR
2FFB Chain:A ((18-221))
---------KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLAL-ADPNWLRRQV-GVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTVKNADRIIVMEKGKI-
General information:
TITO was launched using:
RESULT:
Template:
2FFB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102469 for 1391 contacts (-73.7/contact) +
2D Compatibility (PS) -20615 + (NN) -7643 + (LL) 1596
1D Compatibility (HY) -16000 + (ID) 3250
Total energy: -148381.0 ( -106.67 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_2FFB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FFB-query.scw
PDB file :
Tito_Scwrl_2FFB.pdb
: