Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLVATAP-RVAVLVEYNDREVLEDEVKIKVQFASPKHGTEVVDFRGISPFIDEEFSPEWNLFVSRETNSARGIVFGEFQLGNMVVGEVVERGSKVTEYALGDIVCS-------------------------------YGPIMETVIVKAVDNYKLRKLPKGANWKNAVCYD-PAQFAMSGVRDAHVRAGDYVVVVGLGAIGQIAIQLAKKAGASVVIGVDPLSHRREIAEKHGADATFDPITTDVGLEVKRLTGKLGADSIIETSGNAAALQAALRGIAYGGTISYVAFAKPFPEGFNLGREAHFNNAKIVFSRAASEPNPDYPRWDRKRIEETCWELLMNGYLDCSDIIDPVVPFADSAESYMKYVDQQPDLSIKMGITL |
| 3S2E Chain:A ((3-338)) | MKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCH-TDLHAADGDWPV----------------------KPTLPFIPGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADP-NY--VGLLPDKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLR-VAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIG-GAHGVLVTAVSPK-AFSQAIGMVRRGGTIALNGLPPGDF-GTPIF-DVVLKGITIRGSIVG-----------TRSDLQESLDFAAHGDVKA--TV-STAKLDDVNDVFGR-LREGK-VEGRVVLDF |
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General information:
TITO was launched using:
| RESULT:
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Template: 3S2E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -183486 for 2679 contacts (-68.5/contact) +
2D Compatibility (PS) -33090 + (NN) -8270 + (LL) 1560
1D Compatibility (HY) -3200 + (ID) 2950
Total energy: -229436.0 ( -85.64 by residue)
QMean score : 0.449
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