Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLENDIKKVLYSEEDIILKTKELGAKLTADY--AGKNPLLVGVLKGSVPFMAELLKHIDTHVEIDFMVVSSYHGGTTSSGEVKILKDVDTNIEGRDVIFIEDIIDTGRTLKYLRDMFKYRQANSVKVATLFDKPEGRLVDIDADYVCYDIPNEFIVGFGLDYAENYRNLPYVGVLKEEIYSK
4RHT Chain:C ((23-195))
------KSVLLTAEQIQARIAELGEQIGNDYRTTGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYG-------VVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAV-ANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTL-------
General information:
TITO was launched using:
RESULT:
Template:
4RHT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116698 for 1200 contacts (-97.2/contact) +
2D Compatibility (PS) -17427 + (NN) -6699 + (LL) 848
1D Compatibility (HY) -18800 + (ID) 3600
Total energy: -162376.0 ( -135.31 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_4RHT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RHT-query.scw
PDB file :
Tito_Scwrl_4RHT.pdb
: